Search Protein Sequence for Domains

Paste your amino acid protein sequence(s) into the box below to search for instances of interaction domains and view corresponding per-position ligand-binding scores.

Paste protein sequence(s) in Fasta format. See sample input. Or upload a .fasta file using the button below.
Hmmer, dPuc2, and DomStratStats approaches to domain selection are supported.
The site supports dSPRINT and InteracDome algorithms for determining ligand-binding scoring.
An optional email address where you would like ProtDomain to send you results.
Required for more than 5 sequences, as your job will be queued for processing on the server.